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Cancer Genome Characterization Initiative

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Gene Info

Gene Information For:Hs. PRKAB1, protein kinase, AMP-activated, beta 1 non-catalytic subunit
Sequence ID:NM_006253
Entrez Gene ID:5564
Ensembl ID:ENSG00000111725

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaDTPSNPSNP: GeneViewSNP: VarViewAssemblies

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    b-cell, bone, bone marrow, brain, cartilage, cerebellum, cerebrum, cervix, colon, embryonic tissue, endocrine, esophagus, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, parathyroid, pituitary gland, placenta, pooled tissue, prostate, retina, salivary gland, skin, soft tissue, spleen, stem cell, stomach, synovium, t-cell, testis, thymus, thyroid, uncharacterized tissue, uterus, vascular
  • SAGE Anatomic Viewer
  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in NCI60 microarray data or SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:12q24.1-q24.3Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:12: 120105781 - 120119429

NM_006253 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
1448120105760120106207
449612120110105120110268
613706120111768120111861
707821120112144120112258
822955120114341120114474
9561024120117737120117805
10252400120118052120119427

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
2961281Full LengthBC001007protein kinase, AMP-activated, beta 1 non-catalytic subunit
2961281Full LengthBC001056protein kinase, AMP-activated, beta 1 non-catalytic subunit
2961281Full LengthBC001823protein kinase, AMP-activated, beta 1 non-catalytic subunit
3884583Full LengthBC017671protein kinase, AMP-activated, beta 1 non-catalytic subunit

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_006244  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_006253 NP_006244 Q9Y478 AMPKBI

Related Sequences

 
mRNAGenPeptSwissProt
AF022116 AAC98897 Q9Y478
U83994 AAD09237 Q9Y478
BC001007 AAH01007 Q9Y478
BC001056 AAH01056 Q9Y478
BC001823 AAH01823 Q9Y478
BC017671 AAH17671 Q9Y478
AK312495 BAG35397 B2R6A0
AK301165 BAG62754 B4DVP2
AJ224515 CAA12024 Q9Y478
Y12556 CAA73146 Q9Y478

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens PRKAB1 NP_006244 M.musculus Prkab1 19079 Gene Info NP_114075 97
R.norvegicus Prkab1 83803   NP_114182 96
D.melanogaster alc 35931   NP_610460 65
A.gambiae AgaP_AGAP008195 1277776   XP_317273 63
A.thaliana AT4G16360 827331   NP_193369 40

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)

BioCarta Pathways
Pathway information courtesy of BioCarta