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Cancer Genome Characterization Initiative

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Gene Info

Gene Information For:Hs. VTI1B, Vesicle transport through interaction with t-SNAREs homolog 1B (yeast)
Sequence ID:NM_006370
Entrez Gene ID:10490
Ensembl ID:ENSG00000100568

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaSNPSNP: GeneViewSNP: VarViewAssembliesCancer Aberrations

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    b-cell, bone, bone marrow, brain, cartilage, cerebellum, cerebrum, cervix, colon, ear, embryonic tissue, endocrine, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, parathyroid, peripheral nervous system, pineal gland, pituitary gland, placenta, pooled tissue, prostate, retina, salivary gland, skin, spleen, stem cell, stomach, synovium, t-cell, testis, thymus, thyroid, uncharacterized tissue, uterus, vascular
  • SAGE Anatomic Viewer
  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in NCI60 microarray data or SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:14q24.1Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:14: 68117937 - 68141273

NM_006370 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
303596811786868118197
3604216812015368120214
4225956812313268123305
5967876812644768126638
7888466812919368129251
84713576814109168141601

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
2958320Full LengthBC003142vesicle transport through interaction with t-SNAREs homolog 1B (yeast)

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_006361  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_006370 NP_006361 Q9UEU0 V-SNARE

Related Sequences

 
mRNAGenPeptSwissProt
AF035824 AAC52016 Q9UEU0
AF060902 AAC73059 Q9UEU0
BC003142 AAH03142 Q9UEU0
BT019348 AAV38155 Q9UEU0
BT019960 AAV38763 Q5TZX9
AK291689 BAF84378 A8K6M4
AK316572 BAG38161 B2RE64
CR456757 CAG33038 Q9UEU0
CR542095 CAG46892 Q9UEU0

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens VTI1B NP_006361 M.musculus Vti1b 53612 Gene Info NP_058080 93

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)