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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. C5orf45, chromosome 5 open reading frame 45
Sequence ID:NM_001018061
NM_001018062
NM_001017987
NM_016175
Entrez Gene ID:51149
Ensembl ID:ENSG00000161010

Database Links

UniGeneEntrez GeneEnsembl GeneHPRDVegaSNPSNP: GeneViewSNP: VarViewAssemblies

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    b-cell, bone, bone marrow, brain, cartilage, cerebellum, cerebrum, cervix, colon, ear, embryonic tissue, endocrine, esophagus, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, parathyroid, peripheral nervous system, pituitary gland, placenta, pooled tissue, prostate, retina, salivary gland, skin, soft tissue, spleen, stem cell, stomach, synovium, t-cell, testis, thyroid, uncharacterized tissue, uterus, vascular
  • SAGE Anatomic Viewer
  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in NCI60 microarray data or SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:5q35.3Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:5: 179264275 - 179269020

 Exon Info From UCSC:
NM_001017987
NM_016175

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
3945859Full LengthBC069051chromosome 5 open reading frame 45
3631869IncompleteBC002739chromosome 5 open reading frame 45
5764392IncompleteBC056889hypothetical LOC51149

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_001017987 NP_001017987    
NM_016175 NP_057259 Q6NTE8  

Related Sequences

 
mRNAGenPeptSwissProt
AF153685 AAD51611 Q6NTE8
BC002739 AAH02739 Q6NTE8
BC069051 AAH69051 Q6NTE8
HQ447576 ADQ32062  
AK293901 BAH11622 B7Z1T6
AK298954 BAH12911 B7Z5H5
BX537968 CAD97932 Q6NTE8
AM392546 CAL37424  
AM393590 CAL38467  

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens C5orf45 NP_057259 M.musculus 3010026O09Rik 68067 Gene Info NP_080819 53
R.norvegicus RGD1564036 497895   NP_001102500 52

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)