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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. LASP1, LIM and SH3 protein 1
Sequence ID:NM_001271608
NM_006148
NR_073384
Entrez Gene ID:3927
Ensembl ID:ENSG00000002834

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaDTPSNPSNP: GeneViewSNP: VarViewAssembliesCancer Aberrations

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    adrenal cortex, b-cell, bone, bone marrow, brain, cartilage, cerebellum, cerebrum, cervix, colon, ear, embryonic tissue, endocrine, esophagus, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, peripheral nervous system, pineal gland, placenta, pooled tissue, prostate, retina, salivary gland, skin, soft tissue, spleen, stem cell, stomach, synovium, t-cell, testis, thymus, thyroid, uncharacterized tissue, uterus, vascular
  • SAGE Anatomic Viewer
  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in NCI60 microarray data or SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:17q11-q21.3Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:17: 37075164 - 37077754

Transcript StartTranscript EndChromosomal Start Chromosomal End
14003702611137026510
4014953703433837034432
4965803704667237046756
5816883705466437054771
6898393707057737070727
8409433707129537071398
94441083707485737078021

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
2988698Full LengthBC007560LIM and SH3 protein 1
4470852Full LengthBC012460LIM and SH3 protein 1
3632974IncompleteBC007367LIM and SH3 protein 1

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_006139  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_001271608 NP_001258537    
NM_006148 NP_006139 Q14847 SH3_1
LIM
Nebulin

Related Sequences

 
mRNAGenPeptSwissProt
BC007560 AAH07560 Q14847
BC012460 AAH12460 Q14847
DQ891539 ABM82465  
DQ894728 ABM85654  
AK289847 BAF82536 A8K1D2
AK294704 BAG57861 B4DGQ0
AK295522 BAG58436 B4DIC4
AK296092 BAG58846 B4DJI4
X82456 CAA57833 Q14847

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens LASP1 NP_006139 R.norvegicus Lasp1 29278   NP_116002 97
M.musculus Lasp1 16796 Gene Info NP_034818 96
D.melanogaster Lasp 39864   NP_730192 49
A.gambiae AgaP_AGAP006526 5667268   XP_001688892 47
C.elegans F42H10.3 185685   NP_498874 43

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)