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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.

Gene Info

Gene Information For:Hs. SLC9A3R1, solute carrier family 9, subfamily A (NHE3, cation proton antiporter 3), member 3 regulator 1
Sequence ID:NM_004252
RefSeqGene ID:NG_013022
Entrez Gene ID:9368
Ensembl ID:ENSG00000109062

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaDTPSNPSNP: GeneViewSNP: VarViewAssembliesCancer Aberrations

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    b-cell, bone, bone marrow, brain, cartilage, cerebellum, cerebrum, cervix, colon, embryonic tissue, endocrine, esophagus, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, peripheral nervous system, pituitary gland, placenta, pooled tissue, prostate, retina, salivary gland, skin, soft tissue, spleen, stem cell, stomach, synovium, t-cell, testis, thymus, thyroid, uncharacterized tissue, uterus
  • SAGE Anatomic Viewer
  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in NCI60 microarray data or SAGE data)

Associated Diseases (from OMIM)

DiseaseOther Genes

Cytogenetic Location (from UniGene)

Cytogenetic Location:17q25.1Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:17: 72744783 - 72765494

NM_004252 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
2900516Full LengthBC003361solute carrier family 9 (sodium/hydrogen exchanger), member 3 regulator 1
3138881Full LengthBC001443solute carrier family 9 (sodium/hydrogen exchanger), member 3 regulator 1
3640162Full LengthBC011777solute carrier family 9 (sodium/hydrogen exchanger), member 3 regulator 1
5218414Full LengthBC053350solute carrier family 9 (sodium/hydrogen exchanger), member 3 regulator 1
5496466IncompleteBC049220solute carrier family 9 (sodium/hydrogen exchanger), member 3 regulator 1

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_004243  

Protein Infomation

NM_004252 NP_004243 O14745 PDZ

Related Sequences

AF036241 AAC04572 O14745
AF015926 AAC52084 O14745
BC001443 AAH01443 O14745
BC003361 AAH03361 O14745
BC011777 AAH11777 O14745
BC049220 AAH49220 O14745
BC053350 AAH53350 O14745
AK312498 BAG35400 B2R6A3
AK094467 BAG52871 B3KSV9
AK128474 BAG54683 B3KY21

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene Info Protein
H.sapiens SLC9A3R1 NP_004243 M.musculus Slc9a3r1 26941 Gene Info NP_036160 88
R.norvegicus Slc9a3r1 59114   NP_067605 88
C.elegans tag-60 177736   NP_001040908 35

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)

BioCarta Pathways
Pathway information courtesy of BioCarta