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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. CNTN1, contactin 1
Sequence ID:NM_001256063
NM_001256064
NM_001843
NM_175038
RefSeqGene ID:NG_012058
Entrez Gene ID:1272
Ensembl ID:ENSG00000018236

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaSNPSNP: GeneViewSNP: VarViewAssembliesCancer Aberrations

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:12q11-q12Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:12: 41086243 - 41086394

 Exon Info From UCSC:
NM_001843
NM_175038

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
5273941Full LengthBC036569contactin 1

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_001256063 NP_001242992    
NM_001256064 NP_001242993    
NM_001843 NP_001834 Q12860 fn3
ig
I-set
NM_175038 NP_778203   fn3
ig
I-set
V-set

Related Sequences

 
mRNAGenPeptSwissProt
U07819 AAA67920 Q12860
U07820 AAA67921 Q12860
BC036569 AAH36569 Q12860
AK289544 BAF82233 Q12860
AK289698 BAF82387 Q12860
Z21488 CAA79696 Q12860

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens CNTN1 NP_001834 R.norvegicus Cntn1 117258   NP_476459 95
M.musculus Cntn1 12805 Gene Info NP_001153120 95
C.elegans rig-6 173828   NP_001022014 27

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)