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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. CHD6, Chromodomain helicase DNA binding protein 6
Sequence ID:NM_032221
Entrez Gene ID:84181
Ensembl ID:ENSG00000124177

Database Links

UniGeneEntrez GeneEnsembl GeneHPRDVegaSNPSNP: GeneViewSNP: VarViewAssembliesCancer Aberrations

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:20q12Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:20: 40031243 - 40113227

 Exon Info From UCSC:
NM_032221

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
100069091Full LengthBC172397chromodomain helicase DNA binding protein 6
3875390IncompleteBC012516chromodomain helicase DNA binding protein 6
4341355IncompleteBC021907chromodomain helicase DNA binding protein 6

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_115597  

Protein Infomation

RefSeq
mRNAProteinSwissProtEnzymePfam
NM_032221 NP_115597 Q8TD26 EC 3.6.4.12 SNF2_N
Helicase_C
Chromo
TCH

Related Sequences

 
mRNAGenPeptSwissProtEnzyme
BC021907 AAH21907 Q8TD26 EC 3.6.4.12
BC172397 AAI72397    
AY034072 AAK56405 Q8TD26 EC 3.6.4.12
AF525085 AAN59903 Q8TD26 EC 3.6.4.12
AB037756 BAA92573 Q8TD26 EC 3.6.4.12
AK026022 BAB15325 Q8TD26 EC 3.6.4.12
AK296955 BAG59500 B4DLD8  

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens CHD6 NP_115597 M.musculus Chd6 71389 Gene Info NP_775544 89
R.norvegicus Chd6 311607   NP_001101267 89

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)