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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. SPTSSA, serine palmitoyltransferase, small subunit A
Sequence ID:NM_138288
Entrez Gene ID:171546
Ensembl ID:ENSG00000165389

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaDTPSNPSNP: GeneViewSNP: VarViewAssemblies

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    b-cell, bone marrow, brain, cartilage, cerebrum, cervix, colon, embryonic tissue, endocrine, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, parathyroid, peripheral nervous system, pineal gland, pituitary gland, placenta, pooled tissue, prostate, retina, salivary gland, skin, spleen, stem cell, stomach, testis, thyroid, uncharacterized tissue, uterus, vascular
  • SAGE Anatomic Viewer
  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in NCI60 microarray data or SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:14q13.1Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:14: 34903384 - 34931449

NM_138288 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
623713490214434904509
237225383493130134931467

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
4069530Full LengthBC021701chromosome 14 open reading frame 147
4075637Full LengthBC016805chromosome 14 open reading frame 147
4077762Full LengthBC016808chromosome 14 open reading frame 147
5294549Full LengthBC068480chromosome 14 open reading frame 147

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_138288 NP_612145 Q969W0  

Related Sequences

 
mRNAGenPeptSwissProt
BC016805 AAH16805 Q969W0
BC016808 AAH16808 Q969W0
BC021701 AAH21701 Q969W0
BC068480 AAH68480 Q969W0
HQ447916 ADQ32400  
AK315409 BAG37801 Q969W0

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens SPTSSA NP_612145 M.musculus 1110002B05Rik 104725 Gene Info NP_598815 99
R.norvegicus Sptssa 500651   NP_001041208 99

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)