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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. CXXC5, CXXC finger protein 5
Sequence ID:NM_016463
Entrez Gene ID:51523
Ensembl ID:ENSG00000171604

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaSNPSNP: GeneViewSNP: VarViewAssemblies

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    b-cell, bone, bone marrow, brain, cartilage, cerebellum, cerebrum, cervix, colon, embryonic tissue, endocrine, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, parathyroid, peripheral nervous system, pineal gland, pituitary gland, placenta, pooled tissue, prostate, retina, salivary gland, skin, soft tissue, spleen, stem cell, stomach, testis, thymus, thyroid, uncharacterized tissue, uterus, vascular
  • SAGE Anatomic Viewer
  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in NCI60 microarray data or SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:5q31.2Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:5: 139028300 - 139062680

NM_016463 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
1130139028300139028429
1311214139059948139061031
12151447139062447139062679

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
2989328Full LengthBC017439CXXC finger 5
3050465Full LengthBC002490CXXC finger 5
3343683Full LengthBC006428CXXC finger 5
3925666Full LengthBC024040CXXC finger 5
4139961Full LengthBC041013CXXC finger 5
4158283IncompleteBC050046CXXC finger 5

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_057547  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_016463 NP_057547 Q7LFL8 zf-CXXC

Related Sequences

 
mRNAGenPeptSwissProt
AF151029 AAF36115 Q7LFL8
AY007103 AAG01986 Q7LFL8
BC002490 AAH02490 Q7LFL8
BC006428 AAH06428 Q7LFL8
BC017439 AAH17439 Q7LFL8
BC024040 AAH24040 Q7LFL8
BC041013 AAH41013 Q7LFL8
DQ892589 ABM83515  
DQ895807 ABM86733  
GQ379202 ACU80469 Q7LFL8
AK001782 BAA91907 Q7LFL8
AB097005 BAC77358 Q7LFL8
AB097032 BAC77385 Q7LFL8
AK024338 BAG51292 Q7LFL8

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens CXXC5 NP_057547 R.norvegicus Cxxc5 291670   NP_001007629 96
M.musculus Cxxc5 67393 Gene Info NP_598448 96

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)