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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. ARFGAP1, ADP-ribosylation factor GTPase activating protein 1
Sequence ID:NM_018209
NM_175609
Entrez Gene ID:55738
Ensembl ID:ENSG00000101199

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaSNPSNP: GeneViewSNP: VarViewAssembliesCancer Aberrations

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    b-cell, bone, bone marrow, brain, cartilage, cerebellum, cerebrum, cervix, colon, embryonic tissue, endocrine, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, peripheral nervous system, pineal gland, pituitary gland, placenta, pooled tissue, prostate, retina, salivary gland, skin, soft tissue, spleen, stem cell, stomach, synovium, t-cell, testis, thymus, thyroid, uncharacterized tissue, uterus, vascular
  • SAGE Anatomic Viewer
  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in NCI60 microarray data or SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:20q13.33Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:20: 61917777 - 61919415

 Exon Info From UCSC:
NM_018209
NM_175609

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
3162991Full LengthBC011876ADP-ribosylation factor GTPase activating protein 1
3510221Full LengthBC000786ADP-ribosylation factor GTPase activating protein 1
3628606Full LengthBC006085ADP-ribosylation factor GTPase activating protein 1
5246119Full LengthBC028233ADP-ribosylation factor GTPase activating protein 1

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_783202  NP_060679  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_018209 NP_060679 Q8N6T3 ArfGap
NM_175609 NP_783202   ArfGap

Related Sequences

 
mRNAGenPeptSwissProt
BC000786 AAH00786 Q8N6T3
BC006085 AAH06085 Q8N6T3
BC011876 AAH11876 Q8N6T3
BC028233 AAH28233 Q8N6T3
HQ447319 ADQ31806  
AB015340 BAA88117 Q8N6T3
AK001629 BAA91796 Q8N6T3
AK027268 BAB55009 Q8N6T3
AK027441 BAB55113 Q8N6T3
AK223427 BAD97147 Q53F62
AK296351 BAH12326 B7Z3U0
AK303454 BAH13964 B7Z8H8
AL137744 CAB70901 Q8N6T3

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens ARFGAP1 NP_060679 M.musculus Arfgap1 228998 Gene Info NP_665703 88
R.norvegicus Arfgap1 246310   NP_659558 87
C.elegans K02B12.7 172643   NP_492310 52
A.gambiae AgaP_AGAP006462 1277073   XP_316505 49
D.melanogaster Gap69C 39417   NP_524040 43
A.thaliana AGD7 818331   NP_001031503 37
S.cerevisiae GCS1 851372   NP_010055 35
S.pombe SPCC622.14 2539181   NP_588186 35
A.thaliana AGD6 824538   NP_001030854 34
N.crassa NCU07734 3878132   XP_961984 34

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)

BioCarta Pathways
Pathway information courtesy of BioCarta