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Cancer Genome Characterization Initiative

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Gene Info

Gene Information For:Hs. SPOP, Speckle-type POZ protein
Sequence ID:NM_001007226
NM_003563
NM_001007230
NM_001007227
NM_001007229
NM_001007228
Entrez Gene ID:8405
Ensembl ID:ENSG00000121067

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaDTPSNPSNP: GeneViewSNP: VarViewAssembliesCancer Aberrations

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    b-cell, bone, bone marrow, brain, cartilage, cerebellum, cerebrum, cervix, colon, ear, embryonic tissue, endocrine, esophagus, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, parathyroid, pineal gland, pituitary gland, placenta, pooled tissue, prostate, retina, salivary gland, skin, soft tissue, spleen, stem cell, stomach, synovium, t-cell, testis, thymus, uncharacterized tissue, uterus, vascular
  • SAGE Anatomic Viewer
  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in NCI60 microarray data or SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:17q21.33Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:17: 47677379 - 47755383

 Exon Info From UCSC:
NM_001007226
NM_003563
NM_001007230
NM_001007227
NM_001007229
NM_001007228

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
3445878Full LengthBC003385speckle-type POZ protein
3461565Full LengthBC001269speckle-type POZ protein

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_001007227  NP_001007231  NP_001007229  NP_003554  NP_001007230  NP_001007228  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_001007226 NP_001007227 O43791 BTB
MATH
NM_001007227 NP_001007228 O43791 BTB
MATH
NM_001007228 NP_001007229 O43791 BTB
MATH
NM_001007229 NP_001007230 O43791 BTB
MATH
NM_001007230 NP_001007231 O43791 BTB
MATH
NM_003563 NP_003554 O43791 BTB
MATH

Related Sequences

 
mRNAGenPeptSwissProt
BC001269 AAH01269 O43791
BC003385 AAH03385 O43791
AK222589 BAD96309 O43791
AK293045 BAF85734 A8KAI0
AK312691 BAG35570 O43791
AK293587 BAG57055 B4DEE4
AK300616 BAG62309 B4DUE7
AK303268 BAG64350 B4E088
AK316366 BAH14737 B4DUE7
AJ000644 CAA04199 O43791
AM392588 CAL37466  
AM392643 CAL37521  
AM392731 CAL37609  
AM393008 CAL37886  
AM393567 CAL38444  
AM393826 CAL38701  

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens SPOP NP_001007227 M.musculus Spop 20747 Gene Info NP_079563 100
R.norvegicus Spop 287643   NP_001093966 100
A.gambiae AgaP_AGAP003428 1272801   XP_311713 81
D.melanogaster rdx 41704   NP_650326 80
C.elegans bath-43 176422   NP_001022764 66
A.thaliana BPM4 821170   NP_566212 35

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)