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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. RAG1, recombination activating gene 1
Sequence ID:NM_000448
RefSeqGene ID:NG_007528
Entrez Gene ID:5896
Ensembl ID:ENSG00000166349

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data


Associated Diseases (from OMIM)

DiseaseOther Genes
ALPHA/BETA T-CELL LYMPHOPENIA WITH GAMMA/DELTA T-CELL EXPANSION, SEVERE CYTOMEGALOVIRUS INFECTION, AND AUTOIMMUNITY 
COMBINED CELLULAR AND HUMORAL IMMUNE DEFECTS WITH GRANULOMASRAG2
RAG2
OMENN SYNDROMEDCLRE1C
RAG2
RAG2
SEVERE COMBINED IMMUNODEFICIENCY, B CELL-NEGATIVERAG2
RAG2

Cytogenetic Location (from UniGene)

Cytogenetic Location:11p13Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:11: 36589574 - 36601264

NM_000448 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
11103658956236589671
11165783659484036601307

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
5265661Full LengthBC037344recombination activating gene 1

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_000439  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_000448 NP_000439 P15918 zf-C3HC4

Related Sequences

 
mRNAGenPeptSwissProt
M29474 AAA60248 P15918
BC037344 AAH37344 Q8IY72

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens RAG1 NP_000439 M.musculus Rag1 19373 Gene Info NP_033045 90
R.norvegicus Rag1 84600   NP_445920 90

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)