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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. APOC3, apolipoprotein C-III
Sequence ID:NM_000040
RefSeqGene ID:NG_008949
Entrez Gene ID:345
Ensembl ID:ENSG00000110245

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaDTPSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data


Associated Diseases (from OMIM)

DiseaseOther Genes
HYPERALPHALIPOPROTEINEMIA 2 

Cytogenetic Location (from UniGene)

Cytogenetic Location:11q23.3Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:11: 116700625 - 116703788

NM_000040 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
133116700623116700655
34101116701285116701352
102225116701488116701611
226533116703479116703786

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
5229117Full LengthBC027977apolipoprotein C-III
40119733Full LengthBC121081apolipoprotein C-III
40119734Full LengthBC134419apolipoprotein C-III

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_000031  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_000040 NP_000031 P02656 Apo-CIII

Related Sequences

 
mRNAGenPeptSwissProt
M28613 AAA51760 P02656
M28614 AAA51761 P02656
BC027977 AAH27977 P02656
BC121081 AAI21082 P02656
BC134419 AAI34420 A3KPE2
DQ892044 ABM82970  
DQ895238 ABM86164  
V01513 CAA24757 P02656
X00567 CAA25233 P02656
X01388 CAA25644 P02656

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens APOC3 NP_000031 M.musculus Apoc3 11814 Gene Info NP_075603 63

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)