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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.

Gene Info

Gene Information For:Hs. CLCN3, chloride channel, voltage-sensitive 3
Sequence ID:NM_001243372
RefSeqGene ID:NG_029731
Entrez Gene ID:1182
Ensembl ID:ENSG00000109572

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaSNPSNP: GeneViewSNP: VarViewAssembliesCancer Aberrations

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    brain, cerebellum, cerebrum, embryonic tissue, esophagus, eye, fetus, gastrointestinal tract, kidney, lung, lymphoreticular, mammary gland, nervous, placenta, skin, stem cell, synovium, testis, thymus, uncharacterized tissue, vascular
  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in NCI60 microarray data or SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:4q33Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:Unknown

 Exon Info From UCSC:

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
9020500Full LengthBC136510chloride channel 3
4603941IncompleteBC054877chloride channel 3
100002496BC146697chloride channel 3

Protein Infomation

NM_001243372 NP_001230301    
NM_001243374 NP_001230303    
NM_001829 NP_001820 P51790 CBS
NM_173872 NP_776297   CBS

Related Sequences

AF029346 AAB95161 P51790
AF172729 AAD51034 P51790
BC054877 AAH54877 Q7Z4M4
BC136510 AAI36511 B9EGJ9
BC146697 AAI46698  
AB019542 BAC54560 P51790
AK127483 BAG54512 B3KXK0
AK304362 BAH14168 B7Z932
X78520 CAA55280 P51790
X78520 CAA55281 P51790
AM392951 CAL37829  

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene Info Protein
H.sapiens CLCN3 NP_776297 M.musculus Clcn3 12725 Gene Info NP_776299 99
R.norvegicus Clcn3 84360   NP_445815 99
A.gambiae AgaP_AGAP005777 1276446   XP_001688728 66
D.melanogaster ClC-c 39759   NP_730105 64
C.elegans clh-5 174449   NP_495940 55
N.crassa NCU06444 3873504   XP_957335 46

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)