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Cancer Genome Characterization Initiative

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Gene Info

Gene Information For:Hs. ATG4C, autophagy related 4C, cysteine peptidase
Sequence ID:NM_032852
NM_178221
Entrez Gene ID:84938
Ensembl ID:ENSG00000125703

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaDTPSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:1p31.3Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:1: 63269416 - 63329857

 Exon Info From UCSC:
NM_032852
NM_178221

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
4838543Full LengthBC033024ATG4 autophagy related 4 homolog C (S. cerevisiae)
4657137IncompleteBC018678ATG4 autophagy related 4 homolog C (S. cerevisiae)

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_835739  NP_116241  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_032852 NP_116241 Q96DT6 Peptidase_C54
NM_178221 NP_835739 Q96DT6 Peptidase_C54

Related Sequences

 
mRNAGenPeptSwissProt
BC018678 AAH18678 Q05D29
BC033024 AAH33024 Q96DT6
DQ892482 ABM83408  
DQ895693 ABM86619  
AK027773 BAB55356 Q96DT6
AJ320169 CAC43939 Q96DT6
AJ312234 CAC85556 Q96DT6

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens ATG4C NP_116241 M.musculus Atg4c 242557 Gene Info NP_001139439 90
R.norvegicus Atg4c 313391   NP_001101418 90

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)