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Cancer Genome Characterization Initiative

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Gene Info

Gene Information For:Hs. TMED2, transmembrane emp24 domain trafficking protein 2
Sequence ID:NM_006815
Entrez Gene ID:10959
Ensembl ID:ENSG00000086598

Database Links

UniGeneEntrez GeneEnsembl GeneHPRDVegaDTPSNPSNP: GeneViewSNP: VarViewAssemblies

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    b-cell, bone, bone marrow, brain, cartilage, cerebellum, cerebrum, cervix, colon, embryonic tissue, endocrine, esophagus, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, parathyroid, peripheral nervous system, pituitary gland, placenta, pooled tissue, prostate, retina, salivary gland, skin, soft tissue, spleen, stem cell, stomach, synovium, t-cell, testis, thymus, thyroid, uncharacterized tissue, uterus, vascular
  • SAGE Anatomic Viewer
  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in NCI60 microarray data or SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:12q24.31Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:12: 124081357 - 124082688

NM_006815 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
1288124069075124069362
289481124071293124071485
482589124074888124074995
5902119124081151124082680

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
5020405Full LengthBC025957transmembrane emp24 domain trafficking protein 2

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_006806  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_006815 NP_006806 Q6FHT8
Q15363
EMP24_GP25L

Related Sequences

 
mRNAGenPeptSwissProt
BC025957 AAH25957 Q6FHT8
Q15363
AK312975 BAG35812 Q6FHT8
AK298167 BAG60439 B4DP27
AK303189 BAG64282 B4E020
X92098 CAA63069 Q6FHT8
Q15363
CR541663 CAG46464 Q6FHT8
Q15363
CR541682 CAG46483 Q6FHT8
Q15363

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens TMED2 NP_006806 R.norvegicus Tmed2 65165   NP_113910 100
M.musculus Gm10698 100042343 Gene Info XP_001478063 99
M.musculus Tmed2 56334 Gene Info NP_062744 99
C.elegans sel-9 179213   NP_505145 69
A.gambiae AgaP_AGAP004743 1278482   XP_318076 63
D.melanogaster CHOp24 31382   NP_572165 62
N.crassa NCU08339 3881407   XP_965242 40
S.cerevisiae EMP24 852675   NP_011315 35
S.pombe emp24 2539350   NP_588020 33

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)