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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. CHRNA10, cholinergic receptor, nicotinic, alpha 10 (neuronal)
Sequence ID:NM_020402
Entrez Gene ID:57053
Ensembl ID:ENSG00000129749

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaSNPSNP: GeneViewSNP: VarViewAssemblies

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:11p15.5Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:11: 3686816 - 3692614

NM_020402 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
1999536868173687793
996152836884613688993
1529168336904253690579
1684182936910253691170
1830196236924813692613

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
100015955BC152764cholinergic receptor, nicotinic, alpha 10

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_065135  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_020402 NP_065135 Q9GZZ6 Neur_chan_LBD
Neur_chan_memb

Related Sequences

 
mRNAGenPeptSwissProt
AF199235 AAG00795 Q9GZZ6
BC136250 AAI36251 C4IXS7
BC152764 AAI52765  
AJ295237 CAC16144 Q9GZZ6
AJ278118 CAC20435 Q9GZZ6

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens CHRNA10 NP_065135 M.musculus Chrna10 504186 Gene Info NP_001074893 92
R.norvegicus Chrna10 64574   NP_072161 91

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)