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Cancer Genome Characterization Initiative

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Gene Info

Gene Information For:Hs. UPF2, UPF2 regulator of nonsense transcripts homolog (yeast)
Sequence ID:NM_015542
NM_080599
Entrez Gene ID:26019
Ensembl ID:ENSG00000151461

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaSNPSNP: GeneViewSNP: VarViewAssembliesCancer Aberrations

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:10p14-p13Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:10: 12077125 - 12084808

 Exon Info From UCSC:
NM_015542
NM_080599

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
40082728Full LengthBC115737UPF2 regulator of nonsense transcripts homolog (yeast)
40082739Full LengthBC114964UPF2 regulator of nonsense transcripts homolog (yeast)
30371337IncompleteBC090919UPF2 regulator of nonsense transcripts homolog (yeast)

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_015542 NP_056357 Q9HAU5 MIF4G
Upf2
NM_080599 NP_542166 Q9HAU5 MIF4G
Upf2

Related Sequences

 
mRNAGenPeptSwissProt
AF301013 AAG33225 Q9HAU5
AY013249 AAG48509 Q9HAU5
AF318574 AAG60689 Q9HAU5
BC090919 AAH90919 Q5BKV2
BC114964 AAI14965 Q9HAU5
BC115737 AAI15738 Q9HAU5
AK000764 BAA91369 Q9HAU5
AB037829 BAA92646 Q9HAU5
AK074375 BAB85064 Q8TE88
AK096191 BAC04721 Q9HAU5
AK295209 BAG58205 B4DHP3
AL080198 CAB45771 Q9HAU5

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens UPF2 NP_056357 M.musculus Upf2 326622 Gene Info NP_001074601 97
R.norvegicus Upf2 361271   NP_001101891 97
A.gambiae AgaP_AGAP000337 1271923   XP_310780 41
A.thaliana AT2G39260 818511   NP_181459 40
D.melanogaster Upf2 31724   NP_572434 40
N.crassa NCU05267 3877905   XP_961757 39
S.pombe upf2 2542147   NP_593784 28
S.cerevisiae NMD2 856476   NP_011944 27

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)