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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. PDZK1, PDZ domain containing 1
Sequence ID:NM_001201325
NM_001201326
NM_002614
Entrez Gene ID:5174
Ensembl ID:ENSG00000174827

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaSNPSNP: GeneViewSNP: VarViewAssemblies

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:1q21Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:Unknown

Transcript StartTranscript EndChromosomal Start Chromosomal End
124145727725145727748
2595145743262145743332
96307145747041145747252
308557145748337145748586
558694145752427145752563
695890145753954145754149
8911087145756416145756612
10881312145761177145761401
13131603145762038145762328
16042107145763569145764072

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
2959384Full LengthBC006496PDZ domain containing 1
2959384Full LengthBC006518PDZ domain containing 1

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_001201325 NP_001188254    
NM_001201326 NP_001188255    
NM_002614 NP_002605 Q5T2W1 PDZ

Related Sequences

 
mRNAGenPeptSwissProt
AF012281 AAC12264 Q5T2W1
BC006496 AAH06496 Q5T2W1
BC006518 AAH06518 Q5T2W1
AK313100 BAG35924 B2R7S7
AK298269 BAG60531 B4DPB9
AM393525 CAL38402  

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens PDZK1 NP_001188254 R.norvegicus Pdzk1 65144   NP_113900 78
M.musculus Pdzk1 59020 Gene Info NP_067492 78

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)

BioCarta Pathways
Pathway information courtesy of BioCarta