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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. CHP1, calcineurin-like EF hand protein 1
Sequence ID:NM_007236
Entrez Gene ID:11261
Ensembl ID:ENSG00000187446

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaDTPSNPSNP: GeneViewSNP: VarViewAssemblies

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    b-cell, bone, bone marrow, brain, cartilage, cerebellum, cerebrum, cervix, colon, ear, embryonic tissue, endocrine, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, parathyroid, peripheral nervous system, placenta, pooled tissue, prostate, salivary gland, skin, spleen, stem cell, stomach, synovium, testis, thymus, uncharacterized tissue, uterus, vascular
  • SAGE Anatomic Viewer
  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in NCI60 microarray data or SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:15q13.3Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:15: 41523436 - 41571917

NM_007236 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
12114152343641523646
2122844153586441535936
2853654154910741549187
3664934155495341555080
4945554156275441562815
5566784157096441571086
67932264157153341574080

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
3913445Full LengthBC031293calcium binding protein P22
3996377IncompleteBC008373calcium binding protein P22

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_009167  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_007236 NP_009167 Q99653 efhand

Related Sequences

 
mRNAGenPeptSwissProt
U61538 AAB37770 Q99653
BC031293 AAH31293 Q99653
AK312582 BAG35476 Q99653
AK299660 BAG61577 B4DSB5
CR536539 CAG38776 Q99653
CR542085 CAG46882 Q99653

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens CHP NP_009167 M.musculus 1500003O03Rik 56398 Gene Info NP_062743 99
R.norvegicus Chp 64152   NP_077053 99
A.gambiae AgaP_AGAP001760 1281415   XP_321323 64
D.melanogaster elm 40695   NP_649568 63
C.elegans ZK856.8 179415   NP_505623 59
C.elegans F59D6.7 186617   NP_503830 56
A.thaliana AT3G18430 821372   NP_566610 32

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)