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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. CAPN12, calpain 12
Sequence ID:NM_144691
Entrez Gene ID:147968
Ensembl ID:ENSG00000182472

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDDTPSNPSNP: GeneViewSNP: VarViewAssembliesCancer Aberrations

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:19q13.2Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:19: 39223760 - 39226312

 Exon Info From UCSC:
NM_144691

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
100016452Full LengthBC153093calpain 12
4300206IncompleteBC014027calpain 12
100014486BC140397calpain 12

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_653292  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_004924 NP_004915 O43707 efhand
CH
Spectrin
NM_144691 NP_653292 Q6ZSI9 Peptidase_C2
Calpain_III

Related Sequences

 
mRNAGenPeptSwissProt
U48734 AAC17470 O43707
BC005033 AAH05033 O43707
BC015620 AAH15620 Q96BG6
BC140397 AAI40398 Q6ZSI9
BC153093 AAI53094  
DQ431186 ABD96103 A4K467
DQ893439 ABM84365  
DQ896777 ABM87776  
GU987085 ADG03678 D6PXK4
D89980 BAA24447 O43707
AK127398 BAC86959 Q6ZSI9
AK299955 BAG61782 B4DSX0
AK304554 BAG65349 B4E337

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens CAPN12 NP_653292 M.musculus Capn12 60594 Gene Info NP_001104277 86
R.norvegicus Capn12 308476   NP_001104278 86

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)