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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. PHF8, PHD finger protein 8
Sequence ID:NM_001184896
NM_001184897
NM_001184898
NM_015107
RefSeqGene ID:NG_021309
Entrez Gene ID:23133
Ensembl ID:ENSG00000172943

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaSNPSNP: GeneViewSNP: VarViewAssembliesCancer Aberrations

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    adrenal medulla, b-cell, bone marrow, brain, cartilage, cerebellum, cerebrum, cervix, colon, ear, embryonic tissue, endocrine, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, peripheral nervous system, placenta, pooled tissue, prostate, retina, skin, spleen, stem cell, stomach, t-cell, testis, thymus, thyroid, uncharacterized tissue, uterus, vascular
  • SAGE Anatomic Viewer
  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in NCI60 microarray data or SAGE data)

Associated Diseases (from OMIM)

DiseaseOther Genes
MENTAL RETARDATION SYNDROME, X-LINKED, SIDERIUS TYPE 

Cytogenetic Location (from UniGene)

Cytogenetic Location:Xp11.22Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:X: 53964151 - 54071396

 Exon Info From UCSC:
NM_001184896
NM_001184897
NM_001184898
NM_015107

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
5138930Full LengthBC053861PHD finger protein 8
4404091IncompleteBC017720PHD finger protein 8
5171076IncompleteBC042108PHD finger protein 8

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_055922  

Protein Infomation

RefSeq
mRNAProteinSwissProtEnzymePfam
NM_001184896 NP_001171825 Q9UPP1 EC 1.14.11.27  
NM_001184897 NP_001171826      
NM_001184898 NP_001171827      
NM_015107 NP_055922     PHD
JmjC

Related Sequences

 
mRNAGenPeptSwissProtEnzyme
AF091081 AAC72950 O95327  
BC053861 AAH53861 Q9UPP1 EC 1.14.11.27
AB029034 BAA83063 Q9UPP1 EC 1.14.11.27
AK021696 BAB13877 Q9UPP1 EC 1.14.11.27
AK022788 BAG51116 B3KMV4  
AK304272 BAH14147 Q9UPP1 EC 1.14.11.27
CR933612 CAI45929 Q9UPP1 EC 1.14.11.27

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens PHF8 NP_001171825 R.norvegicus RGD1561065 317425   NP_001101723 95
M.musculus Phf8 320595 Gene Info NP_001106825 95
S.cerevisiae JHD1 856777   NP_010971 36

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)