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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. NUP50, Nucleoporin 50kDa
Sequence ID:NM_007172
NM_153645
Entrez Gene ID:10762
Ensembl ID:ENSG00000093000

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaSNPSNP: GeneViewSNP: VarViewAssembliesCancer Aberrations

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    b-cell, bone, bone marrow, brain, cartilage, cerebellum, cerebrum, cervix, colon, ear, embryonic tissue, endocrine, esophagus, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, pituitary gland, placenta, pooled tissue, prostate, skin, soft tissue, spleen, stem cell, stomach, t-cell, testis, thymus, thyroid, uncharacterized tissue, uterus, vascular
  • SAGE Anatomic Viewer
  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in NCI60 microarray data or SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:22q13.31Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:22: 45560022 - 45580707

 Exon Info From UCSC:
NM_007172
NM_153645

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
4856954Full LengthBC016055nucleoporin 50kDa
5166132Full LengthBC028125nucleoporin 50kDa
6463796Full LengthBC070133nucleoporin 50kDa
3889720IncompleteBC039468nucleoporin 50kDa

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_007172 NP_009103 Q9UKX7  
NM_153645 NP_705931    

Related Sequences

 
mRNAGenPeptSwissProt
AF107840 AAD53401 Q9UKX7
AF116624 AAF71047 Q9UKX7
AF267865 AAG44734 Q9H2I3
BC016055 AAH16055 Q9UKX7
BC028125 AAH28125 Q9UKX7
BC070133 AAH70133 Q9UKX7
EU832782 ACE87793  
GQ129293 ACT64427  
AK314454 BAG37062 Q9UKX7
AK304223 BAG65095 B4E2D3
AL389949 CAB97527 Q9UKX7
AL389950 CAB97528 Q9UKX7
AL389951 CAB97529 Q9NPQ3
CR456533 CAG30419 Q9UKX7
CU013133 CAK54564  
CU013421 CAK54863  

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens NUP50 NP_009103 R.norvegicus Npap60 25497   NP_037123 80
M.musculus Nup50 18141 Gene Info NP_057923 79
D.melanogaster Nup50 35784   NP_610355 42

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)