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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. PATZ1, POZ (BTB) and AT hook containing zinc finger 1
Sequence ID:NM_014323
NM_032052
NM_032050
NM_032051
Entrez Gene ID:23598
Ensembl ID:ENSG00000100105

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaDTPSNPSNP: GeneViewSNP: VarViewAssembliesCancer Aberrations

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:22q12.2Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:22: 31721795 - 31742308

 Exon Info From UCSC:
NM_014323
NM_032052
NM_032050
NM_032051

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
4857537Full LengthBC021091POZ (BTB) and AT hook containing zinc finger 1
6598836IncompleteBC051357zinc finger protein 278

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_055138  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_014323 NP_055138 Q9HBE1 zf-C2H2
BTB
NM_032050 NP_114439    
NM_032051 NP_114440    
NM_032052 NP_114441    

Related Sequences

 
mRNAGenPeptSwissProt
AF119256 AAF32518 Q9HBE1
AF242522 AAF99602 Q9HD72
AF254082 AAG09031 Q9HBE1
AF254083 AAG09032 Q9HBE1
AF254084 AAG09033 Q9HBE1
AF254085 AAG09034 Q9HBE1
BC021091 AAH21091 Q9HBE1
AY028384 AAK19024 Q9HBE1
AB208787 BAD92024 Q59HH1
AK291803 BAF84492 A8K6Y8
AL096880 CAB51404 Q9HBE1
CR456613 CAG30499 Q9HBE1

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens PATZ1 NP_055138 M.musculus Patz1 56218 Gene Info NP_062520 99
R.norvegicus Zfp278 305471   NP_001100701 99

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)