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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. SCARB1, Scavenger receptor class B, member 1
Sequence ID:NM_005505
NM_001082959
RefSeqGene ID:NG_028199
Entrez Gene ID:949
Ensembl ID:ENSG00000073060

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaDTPSNPSNP: GeneViewSNP: VarViewAssembliesCancer Aberrations

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    adrenal cortex, b-cell, bone, bone marrow, brain, cartilage, cerebrum, cervix, colon, embryonic tissue, endocrine, esophagus, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, parathyroid, placenta, pooled tissue, prostate, retina, salivary gland, skin, soft tissue, spleen, stem cell, stomach, t-cell, testis, thymus, uncharacterized tissue, uterus
  • SAGE Anatomic Viewer
  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in NCI60 microarray data or SAGE data)

Associated Diseases (from OMIM)

DiseaseOther Genes
[HIGH DENSITY LIPOPROTIEN CHOLESTEROL LEVEL QTL6] 

Cytogenetic Location (from UniGene)

Cytogenetic Location:12q24.31Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:12: 125267998 - 125348350

 Exon Info From UCSC:
NM_005505
NM_001082959

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
6576008Full LengthBC080647scavenger receptor class B, member 1
7939577Full LengthBC093732scavenger receptor class B, member 1
8327505Full LengthBC112037scavenger receptor class B, member 1
9051824Full LengthBC143319scavenger receptor class B, member 1

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_005496  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_001082959 NP_001076428    
NM_005505 NP_005496   CD36

Related Sequences

 
mRNAGenPeptSwissProt
AF254409 AAF91347 Q9NR60
BC080647 AAH80647 Q8WTV0
BC093732 AAH93732 Q8WTV0
BC112037 AAI12038 Q8WTV0
BC143319 AAI43320 B7ZKQ9
AF515445 AAQ08185 Q8WTV0
DQ892837 ABM83763  
DQ896083 ABM87082  
AB209436 BAD92673 Q59FM4
AK124112 BAG54008 B3KW46
AK302779 BAG63983 B4DZ71
AK304730 BAG65493 B4E3I1
Z22555 CAA80277 Q8WTV0

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens SCARB1 NP_001076428 M.musculus Scarb1 20778 Gene Info NP_058021 79
R.norvegicus Scarb1 25073   NP_113729 78
A.gambiae SCRB9 1275121   XP_314346 34
D.melanogaster emp 37999   NP_523859 34

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)