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Cancer Genome Characterization Initiative

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Gene Info

Gene Information For:Hs. GGPS1, geranylgeranyl diphosphate synthase 1
Sequence ID:NM_001037277
NR_036605
NM_001037278
NM_004837
Entrez Gene ID:9453
Ensembl ID:ENSG00000152904

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDDTPSNPSNP: GeneViewSNP: VarViewAssembliesCancer Aberrations

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    b-cell, bone, bone marrow, brain, cartilage, cerebellum, cerebrum, cervix, colon, embryonic tissue, endocrine, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, parathyroid, peripheral nervous system, pineal gland, pituitary gland, placenta, pooled tissue, prostate, retina, salivary gland, skin, soft tissue, spleen, stem cell, stomach, t-cell, testis, thymus, thyroid, uncharacterized tissue, uterus, vascular
  • SAGE Anatomic Viewer
  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in NCI60 microarray data or SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:1q43Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:1: 235491947 - 235506410

 Exon Info From UCSC:
NM_001037277
NM_001037278
NM_004837

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
4051481Full LengthBC005252geranylgeranyl diphosphate synthase 1
5295932Full LengthBC067768geranylgeranyl diphosphate synthase 1

Protein Infomation

RefSeq
mRNAProteinSwissProtEnzymePfam
NM_001037277 NP_001032354 O95749 EC 2.5.1.29
EC 2.5.1.10
EC 2.5.1.1
 

Related Sequences

 
mRNAGenPeptSwissProtEnzyme
AF125394 AAD43050 O95749 EC 2.5.1.29
EC 2.5.1.10
EC 2.5.1.1
AF057698 AAG45581 O95749 EC 2.5.1.29
EC 2.5.1.10
EC 2.5.1.1
BC005252 AAH05252 O95749 EC 2.5.1.29
EC 2.5.1.10
EC 2.5.1.1
BC067768 AAH67768 O95749 EC 2.5.1.29
EC 2.5.1.10
EC 2.5.1.1
HQ448140 ADQ32621    
AB017971 BAA75909 O95749 EC 2.5.1.29
EC 2.5.1.10
EC 2.5.1.1
AB016043 BAA76511 O95749 EC 2.5.1.29
EC 2.5.1.10
EC 2.5.1.1
AB019036 BAA77251 O95749 EC 2.5.1.29
EC 2.5.1.10
EC 2.5.1.1
AK293278 BAH11480 A8MVQ8  

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens GGPS1 NP_001032354 R.norvegicus Ggps1 291211   NP_001007627 95
M.musculus Ggps1 14593 Gene Info NP_034412 94
A.gambiae AgaP_AGAP006894 1270183   XP_308860 60
D.melanogaster qm 38816   NP_001163370 59
N.crassa NCU01427 3876842   XP_960695 52
S.cerevisiae BTS1 856036   NP_015256 46

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)