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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. TFE3, Transcription factor binding to IGHM enhancer 3
Sequence ID:NM_006521
RefSeqGene ID:NG_016297
Entrez Gene ID:7030
Ensembl ID:ENSG00000068323

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaDTPSNPSNP: GeneViewSNP: VarViewAssembliesCancer Aberrations

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    adrenal cortex, b-cell, bone, bone marrow, brain, cartilage, cerebellum, cerebrum, cervix, colon, embryonic tissue, endocrine, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, peripheral nervous system, placenta, pooled tissue, prostate, skin, soft tissue, spleen, stem cell, stomach, synovium, t-cell, testis, thymus, thyroid, uncharacterized tissue, uterus, vascular
  • SAGE Anatomic Viewer
  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in NCI60 microarray data or SAGE data)

Associated Diseases (from OMIM)

DiseaseOther Genes
RENAL CELL CARCINOMA, PAPILLARYMET
PRCC

Cytogenetic Location (from UniGene)

Cytogenetic Location:Xp11.22Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:X: 48886236 - 48892840

NM_006521 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
3919094888624148888111
191020574888891148889058
205821334889097948891054
213421904889124048891296
219123084889164848891765
230924134889553448895638
241426594889572148895966
266029634889663148896934
296430774889798148898094
307834314890063648900989

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
4576858Full LengthBC026027transcription factor binding to IGHM enhancer 3

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_006512  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_006521 NP_006512 P19532 HLH

Related Sequences

 
mRNAGenPeptSwissProt
BC026027 AAH26027 P19532
EU446500 ABZ92029  
EU831689 ACE86523  
EU831602 ACE87202  
AK313540 BAG36317  
AK295497 BAG58417 B4DIA5
X51330 CAA35714 P19532
X96717 CAA65478 P19532
AL161985 CAI46207 Q5JU74

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens TFE3 NP_006512 M.musculus Tfe3 209446 Gene Info NP_766060 96
R.norvegicus Tfe3 317376   XP_228760 96

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)