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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. PTCD1, pentatricopeptide repeat domain 1
Sequence ID:NM_015545
Entrez Gene ID:26024
Ensembl ID:ENSG00000106246

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaSNPSNP: GeneViewSNP: VarViewAssembliesCancer Aberrations

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    bone marrow, brain, cerebellum, cerebrum, cervix, colon, embryonic tissue, fetus, gastrointestinal tract, kidney, liver, lymphoreticular, mammary gland, nervous, ovary, placenta, prostate, spleen, stem cell, synovium, testis, thymus, uncharacterized tissue, uterus, vascular
  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in NCI60 microarray data or SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:7q22.1Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:Unknown

NM_015545 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
710289901675099017771
102912119902139799021579
121220339902241799023238
203421359902672599026826
213623549902721099027428
235524959903090099031040
249629749903241299032890
297530799903631499036418

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
6645909Full LengthBC080580pentatricopeptide repeat domain 1
40011658Full LengthBC103495pentatricopeptide repeat domain 1
40011661Full LengthBC103502pentatricopeptide repeat domain 1
3356434IncompleteBC024042pentatricopeptide repeat domain 1
3453948IncompleteBC003688pentatricopeptide repeat domain 1
40011663IncompleteBC103661pentatricopeptide repeat domain 1

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_015545 NP_056360 O75127 PPR

Related Sequences

 
mRNAGenPeptSwissProt
BC003688 AAH03688 O75127
BC080580 AAH80580 O75127
BC103495 AAI03496 Q3ZB84
BC103502 AAI03503 O75127
BC103661 AAI03662 Q3SYP6
AB014532 BAA31607 O75127
AK291004 BAF83693 A4D273
AK001615 BAG50949 B3KMD7

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)