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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. SLX1A, SLX1 structure-specific endonuclease subunit homolog A (S. cerevisiae)
Sequence ID:NM_001014999
NM_001015000
Entrez Gene ID:548593
Ensembl ID:ENSG00000132207

Database Links

UniGeneEntrez GeneEnsembl GeneHPRDVegaSNPSNP: GeneViewSNP: VarViewAssemblies

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:16p11.2Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:16: 29465876 - 29469495

 Exon Info From UCSC:
NM_001014999
NM_001015000

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
9052988Full LengthBC144462GIY-YIG domain containing 1
100015825Full LengthBC148777GIY-YIG domain containing 1
100014746BC141497GIY-YIG domain containing 1

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_001015000  NP_001014999  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_001014999 NP_001014999 Q9BQ83 GIY-YIG
NM_001015000 NP_001015000   GIY-YIG

Related Sequences

 
mRNAGenPeptSwissProt
BC141497 AAI41498  
BC144462 AAI44463 Q9BQ83
BC148777 AAI48778  

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens SLX1A NP_001014999 H.sapiens SLX1B 79008 Gene Info NP_076949 100
M.musculus Slx1b 75764 Gene Info NP_083696 78
R.norvegicus Slx1b 293489   NP_001009292 76
A.gambiae AgaP_AGAP002259 1269300   XP_565552 49
D.melanogaster CG18271 40578   NP_649484 47
C.elegans F56A3.2 172157   NP_491541 42
S.pombe slx1 2541657   NP_593420 28

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)