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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. CHDH, choline dehydrogenase
Sequence ID:NM_018397
RefSeqGene ID:NG_028042
Entrez Gene ID:55349
Ensembl ID:ENSG00000016391

Database Links

UniGeneEntrez GeneEnsembl GeneHPRDVegaSNPSNP: GeneViewSNP: VarViewAssembliesCancer Aberrations

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    brain, cerebellum, cerebrum, colon, embryonic tissue, endocrine, gastrointestinal tract, kidney, mammary gland, nervous, ovary, pancreas, pancreatic islet, pooled tissue, stem cell, testis, uncharacterized tissue
  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in NCI60 microarray data or SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:3p21.1Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:Unknown

NM_018397 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
218365385038753852221
183719395385296453853066
194020825385355853853700
208322175385450053854634
221823475385567353855802
234824995385651753856668
250032615385733253858093
326233325387495553875025
333336425388010953880418

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
4824572Full LengthBC034502choline dehydrogenase

Protein Infomation

RefSeq
mRNAProteinSwissProtEnzymePfam
NM_018397 NP_060867 Q8NE62 EC 1.1.99.1 GMC_oxred_N
GMC_oxred_C

Related Sequences

 
mRNAGenPeptSwissProtEnzyme
BC034502 AAH34502 Q8NE62 EC 1.1.99.1
EU831871 ACE86630    
EU831794 ACE87312    
AK297575 BAG59966 B4DMQ4  
AJ272267 CAB75961 Q8NE62 EC 1.1.99.1

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens CHDH NP_060867 R.norvegicus Chdh 290551   NP_942026 85
M.musculus Chdh 218865 Gene Info NP_001129712 84
C.elegans C34C6.4 174390   NP_495846 58
N.crassa NCU09798 3876255   XP_960108 36

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)