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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. CCL1, Chemokine (C-C motif) ligand 1
Sequence ID:NM_002981
Entrez Gene ID:6346
Ensembl ID:ENSG00000108702

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:17q12Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:17: 32687577 - 32690250

NM_002981 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
12823268739832687679
2833943268880332688914
3955423269010432690251

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
8144076Full LengthBC105073chemokine (C-C motif) ligand 1
8144078Full LengthBC105075chemokine (C-C motif) ligand 1
40080744BC111914chemokine (C-C motif) ligand 1

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_002972  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_002981 NP_002972 P22362 IL8

Related Sequences

 
mRNAGenPeptSwissProt
M57502 AAA61196 P22362
BC105073 AAI05074 P22362
BC105075 AAI05076 P22362
BC111914 AAI11915  
AK312183 BAG35116 P22362

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens CCL1 NP_002972 R.norvegicus Ccl1 688605   XP_001067590 44
M.musculus Ccl1 20290 Gene Info NP_035459 43

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)