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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. TRMT13, tRNA methyltransferase 13 homolog (S. cerevisiae)
Sequence ID:NM_019083
Entrez Gene ID:54482
Ensembl ID:ENSG00000122435

Database Links

UniGeneEntrez GeneEnsembl GeneHPRDVegaSNPSNP: GeneViewSNP: VarViewAssemblies

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:1p21.2Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:1: 100598720 - 100610123

 Exon Info From UCSC:
NM_019083

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
5104751Full LengthBC075811coiled-coil domain containing 76
4699485IncompleteBC057226coiled-coil domain containing 76

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_061956  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_001256385 NP_001243314    
NM_001256386 NP_001243315    
NM_001256387 NP_001243316    
NM_019083 NP_061956 Q9NUP7 DUF715
NM_144620 NP_653221 Q96DD0 LRR_1

Related Sequences

 
mRNAGenPeptSwissProt
BC009613 AAH09613 Q96DD0
BC075811 AAH75811 Q9NUP7
AY358131 AAQ88498 Q96DD0
DQ893490 ABM84416  
DQ896434 ABM87433  
AK001149 BAA91520 Q9NUP7
AK002081 BAA92074 Q9NUP7
AK289404 BAF82093 A8K039
AK096892 BAG53394 Q96DD0
AK294738 BAG57881 B4DGS0
AK295828 BAG58644 B4DIY2
AK298941 BAG61041 B4DQS9
AM392701 CAL37579  
AM393106 CAL37984  

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens CCDC76 NP_061956 M.musculus Ccdc76 229780 Gene Info NP_084292 87
R.norvegicus Ccdc76 499697   NP_001029074 86
A.gambiae AgaP_AGAP000681 1272416   XP_311210 40
S.pombe trm13 2542398   NP_593914 38
A.thaliana AT4G01880 828223   NP_192097 38
D.melanogaster CG18048 40782   NP_649646 37
S.cerevisiae TRM13 853995   NP_014516 37
C.elegans Y49A3A.3 3565972   NP_506560 33

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)