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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. RNF20, ring finger protein 20, E3 ubiquitin protein ligase
Sequence ID:NM_019592
Entrez Gene ID:56254
Ensembl ID:ENSG00000155827

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaSNPSNP: GeneViewSNP: VarViewAssemblies

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:9q22Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:9: 104296132 - 104325622

 Exon Info From UCSC:
NM_019592

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
40009034Full LengthBC152309ring finger protein 20
40009044Full LengthBC110584ring finger protein 20
40009047Full LengthBC110585ring finger protein 20
4106294IncompleteBC016691ring finger protein 20
5577945IncompleteBC032618ring finger protein 20
30327678IncompleteBC063115ring finger protein 20

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_062538  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_019592 NP_062538 Q5VTR2 zf-C3HC4

Related Sequences

 
mRNAGenPeptSwissProt
AY006321 AAG15824  
AF305515 AAG21410  
AF283791 AAG44865  
BC016691 AAH16691 Q05DC0
BC032618 AAH32618 A0PJJ6
BC063115 AAH63115 Q5VTR2
BC110584 AAI10585 Q5VTR2
BC110585 AAI10586 Q5VTR2
BC152309 AAI52310 Q5VTR2
AF265230 AAK58539 Q5VTR2
AK000389 BAA91134 Q5VTR2
AK000697 BAA91326 Q5VTR2
AK002051 BAA92057 Q5VTR2
AK022300 BAB14005 Q5VTR2
AK022532 BAB14081 Q5VTR2
AK314401 BAG37025 Q5VTR2
AL834272 CAD38947 Q5VTR2
AL832910 CAH10630 Q5VTR2

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens RNF20 NP_062538 M.musculus Rnf20 109331 Gene Info NP_001156735 98
R.norvegicus Rnf20 313216   NP_001101399 97
C.elegans rfp-1 176180   NP_001022700 28
N.crassa NCU07544 3875195   XP_959057 27
S.cerevisiae BRE1 851485   NP_010209 24
S.pombe brl2 2539307   NP_587845 22

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)