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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. SAFB, Scaffold attachment factor B
Sequence ID:NM_001201338
NM_001201339
NM_002967
NM_001201340
Entrez Gene ID:6294
Ensembl ID:ENSG00000160633

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaDTPSNPSNP: GeneViewSNP: VarViewAssembliesCancer Aberrations

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    adrenal cortex, b-cell, bone, bone marrow, brain, cartilage, cerebellum, cerebrum, cervix, colon, embryonic tissue, endocrine, esophagus, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, parathyroid, peripheral nervous system, pineal gland, placenta, pooled tissue, prostate, retina, salivary gland, skin, spleen, stem cell, stomach, synovium, t-cell, testis, thymus, thyroid, uncharacterized tissue, uterus, vascular
  • SAGE Anatomic Viewer
  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in NCI60 microarray data or SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:19p13.3-p13.2Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:19: 5623128 - 5664139


Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
8991935Full LengthBC126219scaffold attachment factor B
9052455Full LengthBC143937scaffold attachment factor B
9052456Full LengthBC143938scaffold attachment factor B
9052457Full LengthBC143939scaffold attachment factor B

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_002958  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_001201338 NP_001188267    
NM_001201339 NP_001188268    
NM_001201340 NP_001188269    
NM_002967 NP_002958 Q15424 RRM_1
SAP

Related Sequences

 
mRNAGenPeptSwissProt
U72355 AAC00056 Q15424
L43631 AAC18697 Q15424
BC126219 AAI26220 A0AV56
BC143937 AAI43938 A0AV56
BC143938 AAI43939 B7ZLP5
BC143939 AAI43940 B7ZLP6
AB208780 BAD92017 Q15424
AK290444 BAF83133 A8K329
AK293152 BAH11463 B7Z1C7
AK294671 BAH11842 B7Z2F6
AK294718 BAH11859 B7Z2H3
AK295298 BAH12027 B7Z2Z1
AK298707 BAH12852 B7Z5B6
AK299525 BAH13059 B7Z5X3
AK304474 BAH14195 B7Z959
CR749251 CAH18107 Q68DW3

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens SAFB NP_002958 M.musculus Safb 224903 Gene Info NP_001156772 87
R.norvegicus Safb 64196   NP_071789 85

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)