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Cancer Genome Characterization Initiative

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Gene Info

Gene Information For:Hs. GATC, glutamyl-tRNA(Gln) amidotransferase, subunit C
Sequence ID:NM_176818
NR_033684
Entrez Gene ID:283459
Ensembl ID:ENSG00000257218

Database Links

UniGeneEntrez GeneEnsembl GeneHPRDVegaDTPSNPSNP: GeneViewSNP: VarViewAssemblies

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    b-cell, bone, bone marrow, brain, cartilage, cerebellum, cerebrum, cervix, colon, ear, embryonic tissue, endocrine, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, parathyroid, peripheral nervous system, pituitary gland, placenta, pooled tissue, prostate, retina, salivary gland, skin, spleen, stem cell, stomach, t-cell, testis, thymus, thyroid, uncharacterized tissue, uterus, vascular
  • SAGE Anatomic Viewer
  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in NCI60 microarray data or SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:12q24.31Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:12: 120884246 - 120899389

NM_176818 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
1124120884240120884363
125297120884459120884631
298401120894878120894981
4024247120897709120901554

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
40031296Full LengthBC107145glutamyl-tRNA(Gln) amidotransferase, subunit C homolog (bacterial)
4822098IncompleteBC034962hypothetical protein LOC283459
5588592IncompleteBC064523glutamyl-tRNA(Gln) amidotransferase, subunit C homolog (bacterial)
6200931IncompleteBC047778hypothetical protein LOC283459
40031298IncompleteBC107146glutamyl-tRNA(Gln) amidotransferase, subunit C homolog (bacterial)

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_789788  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_176818 NP_789788 O43716 Glu-tRNAGln

Related Sequences

 
mRNAGenPeptSwissProt
BC107145 AAI07146 O43716
BC107146 AAI07147 O43716
AK094319 BAG52859 O43716

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens GATC NP_789788 M.musculus Gatc 384281 Gene Info NP_083921 76
R.norvegicus Gatc 360821   NP_001101809 68

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)