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Cancer Genome Characterization Initiative

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Gene Info

Gene Information For:Hs. HLA-DMA, major histocompatibility complex, class II, DM alpha
Sequence ID:NM_006120
RefSeqGene ID:NG_012006
Entrez Gene ID:3108
Ensembl ID:ENSG00000204257

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaDTPSNPSNP: GeneViewSNP: VarViewAssembliesCancer Aberrations

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    b-cell, bone, bone marrow, brain, cartilage, cerebrum, cervix, colon, embryonic tissue, endocrine, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, peripheral nervous system, pituitary gland, placenta, pooled tissue, prostate, retina, salivary gland, skin, spleen, stem cell, stomach, synovium, t-cell, testis, thymus, thyroid, uncharacterized tissue, uterus, vascular
  • SAGE Anatomic Viewer
  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in NCI60 microarray data or SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:6p21.3Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:6: 32931071 - 32936268

NM_006120 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
12553291639032916644
2563843291704732917175
3856633291738732917665
6649483291829532918579
94911223292072532920898

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
4245221Full LengthBC011447major histocompatibility complex, class II, DM alpha
4703588Full LengthBC026279major histocompatibility complex, class II, DM alpha

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_006111  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_006120 NP_006111 Q31604
Q6ICR9
MHC_II_alpha
C1-set

Related Sequences

 
mRNAGenPeptSwissProt
BC011447 AAH11447 Q31604
Q6ICR9
BC026279 AAH26279 Q31604
Q6ICR9
DQ892839 ABM83765  
DQ896086 ABM87085  
AK291858 BAF84547 Q31604
X62744 CAA44606 P28067
CR450324 CAG29320 Q31604
Q6ICR9

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens HLA-DMA NP_006111 M.musculus H2-DMa 14998 Gene Info NP_034516 76
R.norvegicus RT1-DMa 294274   NP_942036 76

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)