Skip Navigation
NCI banner National Cancer Institute U.S. National Institutes of Health National Cancer Institute
Genes
  • Gene Tools
Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. SPEF1, sperm flagellar 1
Sequence ID:NM_015417
Entrez Gene ID:25876
Ensembl ID:ENSG00000101222

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaSNPSNP: GeneViewSNP: VarViewAssemblies

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:20pter-q11.23

Chromosomal Position (from UCSC)

Chromosomal Position:20: 3759528 - 3762113

NM_015417 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
1282637581513758965
82795037590673759190
951101137593923759452
1012105137595973759636
1052120837598423759998
1209132037603103760421
1321159737618253762101

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
4816764Full LengthBC022476sperm flagellar 1

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_056232  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_015417 NP_056232 Q9Y4P9 DUF1042

Related Sequences

 
mRNAGenPeptSwissProt
BC022476 AAH22476 Q9Y4P9
EF560745 ABQ59055 Q9Y4P9
JF432731 ADZ15948  
AK313766 BAG36504 B2R9F7
AL080154 CAB45745 Q9Y4P9

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens SPEF1 NP_056232 M.musculus Spef1 70997 Gene Info NP_081917 89
A.gambiae AgaP_AGAP008402 1277578   XP_317050 41

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)