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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. CTR9, Ctr9, Paf1/RNA polymerase II complex component, homolog (S. cerevisiae)
Sequence ID:NM_014633
Entrez Gene ID:9646
Ensembl ID:ENSG00000198730

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaDTPSNPSNP: GeneViewSNP: VarViewAssembliesCancer Aberrations

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    b-cell, bone, bone marrow, brain, cartilage, cerebellum, cerebrum, cervix, colon, ear, embryonic tissue, endocrine, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, parathyroid, peripheral nervous system, pituitary gland, placenta, pooled tissue, prostate, retina, salivary gland, skin, soft tissue, spleen, stem cell, stomach, synovium, t-cell, testis, thymus, thyroid, uncharacterized tissue, uterus, vascular
  • SAGE Anatomic Viewer
  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in NCI60 microarray data or SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:11p15.3Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:11: 10772797 - 10801093

 Exon Info From UCSC:
NM_014633

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
6527835Full LengthBC058914Ctr9, Paf1/RNA polymerase II complex component, homolog (S. cerevisiae)

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_055448  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_014633 NP_055448 Q6PD62 TPR_1
TPR_2

Related Sequences

 
mRNAGenPeptSwissProt
BC058914 AAH58914 Q6PD62
D63875 BAA09925 Q6PD62
AK291794 BAF84483 A8K6X9

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens CTR9 NP_055448 M.musculus Ctr9 22083 Gene Info NP_033457 98
R.norvegicus Ctr9 293184   XP_238127 98
A.gambiae AgaP_AGAP001559 1281609   XP_321554 63
D.melanogaster CG2469 38149   NP_788449 60
C.elegans B0464.2 176335   NP_499090 43
N.crassa NCU00095 3873382   XP_957219 30
S.pombe tpr1 2542077   NP_594620 29
S.cerevisiae CTR9 854020   NP_014496 28
A.thaliana ELF8 815177   NP_178674 13

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)