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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. SHPRH, SNF2 histone linker PHD RING helicase, E3 ubiquitin protein ligase
Sequence ID:NM_001042683
NM_173082
Entrez Gene ID:257218
Ensembl ID:ENSG00000146414

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaSNPSNP: GeneViewSNP: VarViewAssembliesCancer Aberrations

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:6q24.3Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:6: 146264765 - 146285233

 Exon Info From UCSC:
NM_001042683
NM_173082

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
40071177Full LengthBC117686SNF2 histone linker PHD RING helicase

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_775105  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_001042683 NP_001036148 Q149N8  
NM_173082 NP_775105   SNF2_N
Helicase_C
Linker_histone
PHD

Related Sequences

 
mRNAGenPeptSwissProt
BC113089 AAI13090 Q149N8
BC117685 AAI17686 Q149N8
BC117686 AAI17687 Q149N8
AY163808 AAO06907 Q149N8
AY161136 AAO26201 Q149N8
AK094944 BAC04459 Q149N8
AK075318 BAC11544 Q149N8
AB095943 BAC23119 Q149N8
AK126959 BAG54410 B3KX98
CR749290 CAH18145 Q149N8

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens SHPRH NP_001036148 M.musculus Shprh 268281 Gene Info NP_001071175 87
R.norvegicus Shprh 308282   NP_001100940 86
A.thaliana AT2G40770 818674   NP_181609 39
D.melanogaster CG7376 38715   NP_648034 34
A.gambiae AgaP_AGAP007417 1269771   XP_308421 34

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)