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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. APLF, aprataxin and PNKP like factor
Sequence ID:NM_173545
Entrez Gene ID:200558
Ensembl ID:ENSG00000169621

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaSNPSNP: GeneViewSNP: VarViewAssembliesCancer Aberrations

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:2p13.3Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:2: 68694690 - 68805580

NM_173545 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
12696869469068694958
2703416871732168717392
3425146872986268730034
5156626874021168740358
6637956874067968740811
7969776875319268753373
97813336876500368765358
133414596877231868772443
146015066879447268794518
150738486880495168807292

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
6042653Full LengthBC041144aprataxin and PNKP like factor
4822182IncompleteBC030711chromosome 2 open reading frame 13

Protein Infomation

RefSeq
mRNAProteinSwissProtEnzymePfam
NM_173545 NP_775816 Q8IW19 EC 4.2.99.18  

Related Sequences

 
mRNAGenPeptSwissProtEnzyme
BC041144 AAH41144 Q8IW19 EC 4.2.99.18
AK290841 BAF83530 Q8IW19 EC 4.2.99.18

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens APLF NP_775816 M.musculus Aplf 72103 Gene Info NP_001163960 62
R.norvegicus Aplf 500247   XP_575597 59

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)