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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. HSPA1B, Heat shock 70kDa protein 1B
Sequence ID:NM_005346
Entrez Gene ID:3304
Ensembl ID:ENSG00000204388

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaSNPSNP: GeneViewSNP: VarViewAssembliesCancer Aberrations

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    b-cell, bone marrow, brain, cartilage, cerebellum, cerebrum, cervix, colon, embryonic tissue, endocrine, esophagus, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, peripheral nervous system, placenta, pooled tissue, prostate, retina, skin, soft tissue, spleen, stem cell, stomach, synovium, t-cell, testis, thymus, thyroid, uncharacterized tissue, uterus, vascular
  • SAGE Anatomic Viewer
  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in NCI60 microarray data or SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:6p21.3Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:6: 31783319 - 31784607

NM_005346 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
125203179551131798030

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
4153196Full LengthBC063507heat shock 70kDa protein 1B
6188453Full LengthBC057397heat shock 70kDa protein 1B
3547046IncompleteBC001876heat shock 70kDa protein 1B

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_005337  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_005346 NP_005337   HSP70

Related Sequences

 
mRNAGenPeptSwissProt
BC057397 AAH57397 P08107
BC063507 AAH63507 P08107
DQ896426 ABM87425  
AK295398 BAG58351 B4DI39
AK303967 BAG64891 B4E1S9

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens HSPA1B NP_005337 H.sapiens HSPA1A 3303 Gene Info NP_005336 100
R.norvegicus Hspa1b 294254   NP_997669 97
R.norvegicus Hspa1a 24472   NP_114177 97
M.musculus Hspa1b 15511 Gene Info NP_034608 95
M.musculus Hspa1a 193740 Gene Info NP_034609 95
D.melanogaster Hsp70Ba 44921   NP_731716 76
A.thaliana Hsp70b 838174   NP_173055 76
D.melanogaster Hsp70Bb 48582   NP_524927 76
D.melanogaster Hsp70Bbb 50022   NP_788663 76
D.melanogaster Hsp70Aa 48581   NP_731651 76
D.melanogaster Hsp70Ab 44920   NP_524798 76
D.melanogaster Hsp70Bc 48583   NP_650209 76
P.falciparum PF08_0054 2655254   XP_001349336 74
D.melanogaster Hsp68 42852   NP_524474 74

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)