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Cancer Genome Characterization Initiative

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Gene Info

Gene Information For:Hs. DDX47, DEAD (Asp-Glu-Ala-Asp) box polypeptide 47
Sequence ID:NM_016355
NM_201224
Entrez Gene ID:51202
Ensembl ID:ENSG00000213782

Database Links

UniGeneEntrez GeneEnsembl GeneHPRDVegaDTPSNPSNP: GeneViewSNP: VarViewAssembliesCancer Aberrations

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    b-cell, bone, bone marrow, brain, cartilage, cerebellum, cerebrum, cervix, colon, embryonic tissue, endocrine, esophagus, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, pituitary gland, placenta, pooled tissue, prostate, retina, salivary gland, skin, soft tissue, spleen, stem cell, stomach, synovium, t-cell, testis, thymus, thyroid, uncharacterized tissue, uterus, vascular
  • SAGE Anatomic Viewer
  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in NCI60 microarray data or SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:12p13.1Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:12: 12966322 - 12982911

 Exon Info From UCSC:
NM_016355
NM_201224

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
6142837Full LengthBC068009DEAD (Asp-Glu-Ala-Asp) box polypeptide 47
4125275IncompleteBC009379DEAD (Asp-Glu-Ala-Asp) box polypeptide 47

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_057439  NP_957518  

Protein Infomation

RefSeq
mRNAProteinSwissProtEnzymePfam
NM_001130415 NP_001123887 Q96LR9    
NM_016355 NP_057439 Q9H0S4 EC 3.6.4.13 DEAD
Helicase_C
NM_030817 NP_110444      
NM_201224 NP_957518     DEAD
Helicase_C

Related Sequences

 
mRNAGenPeptSwissProtEnzyme
AF078843 AAF23354 Q9UI98  
BC009379 AAH09379 Q9H0S4 EC 3.6.4.13
BC042478 AAH42478 Q96LR9  
BC068009 AAH68009 Q9H0S4 EC 3.6.4.13
BC126433 AAI26434 A0AVN6  
BC126435 AAI26436 A0AVN6  
AF190165 AAQ13709 Q7Z4B1  
EF036507 ABO65093 A4UCU0  
AK054574 BAB70762 Q9H0S4 EC 3.6.4.13
AK222940 BAD96660 Q53GJ1  
AK314392 BAG37017 A0AVN6  
AK302536 BAG63808 B4DYP6  
AL136666 CAB66601 Q9H0S4 EC 3.6.4.13
AL136783 CAB66717 Q96LR9  
AJ276704 CAC14786 Q9H4E3  
AM393320 CAL38198    
AM393383 CAL38261    
AM393714 CAL38590    

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens DDX47 NP_057439 M.musculus Ddx47 67755 Gene Info NP_080636 96
A.gambiae AgaP_AGAP009808 1279222   XP_318913 72
D.melanogaster CG9253 35379   NP_610090 72
S.pombe SPAC823.08c 2543571   NP_593835 66
C.elegans T26G10.1 176321   NP_499069 65
N.crassa NCU04504 3873086   XP_956915 62
A.thaliana AT5G60990 836220   NP_568931 61
S.cerevisiae RRP3 856462   NP_011932 57

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)