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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. TRPA1, transient receptor potential cation channel, subfamily A, member 1
Sequence ID:NM_007332
Entrez Gene ID:8989
Ensembl ID:ENSG00000104321

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:8q13Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:8: 72932151 - 72987852

 Exon Info From UCSC:
NM_007332

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
100016279Full LengthBC153003transient receptor potential cation channel, subfamily A, member 1
100015422BC148423transient receptor potential cation channel, subfamily A, member 1

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_015628  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_007332 NP_015628 O75762 Ank
Ion_trans

Related Sequences

 
mRNAGenPeptSwissProt
BC148423 AAI48424 O75762
BC153003 AAI53004  
Y10601 CAA71610 O75762

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens TRPA1 NP_015628 M.musculus Trpa1 277328 Gene Info NP_808449 80
R.norvegicus Trpa1 312896   NP_997491 80
A.gambiae AgaP_AGAP004863 1275095   XP_314325 39
D.melanogaster TrpA1 39015   NP_648263 39
C.elegans trpa-1 178118   NP_502249 30

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)