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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. COL9A3, Collagen, type IX, alpha 3
Sequence ID:NM_001853
RefSeqGene ID:NG_016353
Entrez Gene ID:1299
Ensembl ID:ENSG00000092758

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaDTPSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data


Associated Diseases (from OMIM)

DiseaseOther Genes
EPIPHYSEAL DYSPLASIA, MULTIPLE, 3 
INTERVERTEBRAL DISC DISEASEASPN
CILP
COL11A1
COL9A2
MMP9
THBS2

Cytogenetic Location (from UniGene)

Cytogenetic Location:20q13.3Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:20: 61462491 - 61472496

 Exon Info From UCSC:
NM_001853

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
3830925Full LengthBC011705collagen, type IX, alpha 3
3139559IncompleteBC007574collagen, type IX, alpha 3
3640176IncompleteBC004412collagen, type IX, alpha 3

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_001844  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_001853 NP_001844 Q14050 Collagen

Related Sequences

 
mRNAGenPeptSwissProt
L41162 AAC41947 Q14050
BC004412 AAH04412 Q9BT15
BC007574 AAH07574 Q96IF4
BC011705 AAH11705 Q14050
DQ892946 ABM83872  
DQ896194 ABM87193  
X91013 CAA62495 Q14050

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens COL9A3 NP_001844 M.musculus Col9a3 12841 Gene Info NP_034066 91

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)