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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. VCAN, versican
Sequence ID:NM_001126336
NM_001164097
NM_001164098
NM_004385
RefSeqGene ID:NG_012682
Entrez Gene ID:1462
Ensembl ID:ENSG00000038427

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaSNPSNP: GeneViewSNP: VarViewAssembliesCancer Aberrations

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    bone marrow, brain, colon, ear, embryonic tissue, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, nervous, ovary, pancreas, pancreatic islet, peripheral nervous system, placenta, pooled tissue, prostate, retina, skin, soft tissue, stem cell, stomach, testis, uncharacterized tissue, uterus, vascular
  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in NCI60 microarray data or SAGE data)

Associated Diseases (from OMIM)

DiseaseOther Genes
WAGNER SYNDROME 1 

Cytogenetic Location (from UniGene)

Cytogenetic Location:5q14.3Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:Unknown

 Exon Info From UCSC:
NM_001126336
NM_001164097
NM_001164098
NM_004385

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
100068970BC172276versican

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_001126336 NP_001119808    
NM_001164097 NP_001157569    
NM_001164098 NP_001157570    
NM_004385 NP_004376 P13611 EGF
Lectin_C
Sushi
Xlink
V-set

Related Sequences

 
mRNAGenPeptSwissProt
J02814 AAA36437 P13611
U16306 AAA65018 P13611
U26555 AAA67565 P13611
AF084545 AAD48545 P13611
BC050524 AAH50524 Q86W61
BC172276 AAI72276  
D32039 BAA06801 P13611
AB209491 BAD92728 Q59FG9
AK296285 BAH12302 B7Z3R6
AK299770 BAH13124 B7Z638
X15998 CAA34128 P13611
BX641036 CAE46022 Q6MZK8

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens VCAN NP_004376 M.musculus Vcan 13003 Gene Info NP_001074718 64
R.norvegicus Vcan 114122   XP_215451 62

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)