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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. CIB1, calcium and integrin binding 1 (calmyrin)
Sequence ID:NM_006384
Entrez Gene ID:10519
Ensembl ID:ENSG00000185043

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaDTPSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    b-cell, bone, bone marrow, brain, cartilage, cerebrum, cervix, colon, embryonic tissue, endocrine, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, parathyroid, peripheral nervous system, pituitary gland, placenta, pooled tissue, prostate, salivary gland, skin, spleen, stem cell, stomach, t-cell, testis, thyroid, uncharacterized tissue, uterus, vascular
  • SAGE Anatomic Viewer
  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in NCI60 microarray data or SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:15q25.3-q26Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:15: 90773717 - 90777117

NM_006384 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
202799077347790773736
2803689077416590774253
3694879077432690774444
4886389077458890774738
6397479077545090775558
7487829077690090776934
7839959077706690777278

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
3457844Full LengthBC000846calcium and integrin binding 1 (calmyrin)

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_006375  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_006384 NP_006375 Q99828 efhand

Related Sequences

 
mRNAGenPeptSwissProt
U83236 AAB39758 Q99828
U85611 AAB53387 Q99828
U82226 AAC51106 Q99828
BC000846 AAH00846 Q99828
DQ891196 ABM82122  
DQ894379 ABM85305  
JQ246073 AEZ06077 H6WJF3
AB451276 BAG70090 Q99828
AB451406 BAG70220 Q99828
CR456955 CAG33236 Q99828

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens CIB1 NP_006375 R.norvegicus Cib1 81823   NP_112407 94
M.musculus Cib1 23991 Gene Info NP_036000 94
A.gambiae AgaP_AGAP008474 1277504   XP_316971 48

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)