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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. POLR2D, polymerase (RNA) II (DNA directed) polypeptide D
Sequence ID:NM_004805
Entrez Gene ID:5433
Ensembl ID:ENSG00000144231

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaDTPSNPSNP: GeneViewSNP: VarViewAssemblies

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:2q21Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:2: 128604232 - 128605225

NM_004805 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
151933128603840128605758
19342029128608163128608258
20302210128610498128610678
22112338128615601128615728

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
3617979Full LengthBC017205polymerase (RNA) II (DNA directed) polypeptide D
7939640Full LengthBC093795polymerase (RNA) II (DNA directed) polypeptide D
7939642Full LengthBC093797polymerase (RNA) II (DNA directed) polypeptide D
3543781IncompleteBC002958polymerase (RNA) II (DNA directed) polypeptide D

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_004796  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_004805 NP_004796 O15514 RNA_pol_Rpb4

Related Sequences

 
mRNAGenPeptSwissProt
U85510 AAC80226 O15514
BC010427 AAH10427 Q96FU3
BC017205 AAH17205 O15514
BC093795 AAH93795 O15514
BC093797 AAH93797 O15514

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens POLR2D NP_004796 M.musculus Polr2d 69241 Gene Info NP_081278 100
R.norvegicus Polr2d 364834   NP_001102356 100
A.gambiae AgaP_AGAP001228 1281943   XP_321930 78
C.elegans rpb-4 174208   NP_495544 59
A.thaliana NRPB4 830853   NP_196554 40

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)