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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.

Gene Info

Gene Information For:Hs. SQLE, squalene epoxidase
Sequence ID:NM_003129
Entrez Gene ID:6713
Ensembl ID:ENSG00000104549

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    adrenal cortex, b-cell, bone, bone marrow, brain, cartilage, cerebellum, cerebrum, cervix, colon, ear, embryonic tissue, endocrine, esophagus, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, parathyroid, peripheral nervous system, placenta, pooled tissue, prostate, retina, skin, soft tissue, stem cell, stomach, synovium, t-cell, testis, thymus, thyroid, uncharacterized tissue, uterus, vascular
  • SAGE Anatomic Viewer
  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in NCI60 microarray data or SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:8q24.1Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:8: 126011490 - 126034506

 Exon Info From UCSC:

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
3846346Full LengthBC017033squalene epoxidase

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_003120  

Protein Infomation

NM_003129 NP_003120 Q14534

Related Sequences

AF098865 AAD10823 Q14534
BC017033 AAH17033 Q9UNR6  
DQ894657 ABM85583    
D78129 BAA11209 Q14534 EC
D78130 BAA22372 Q14534 EC
AK313384 BAG36182 Q9UNR6  
AK295302 BAG58282 B4DHX0  
AK301792 BAG63246 B4DX34  
BX647605 CAI46076 Q5HYI4  
AM393564 CAL38441    

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene Info Protein
H.sapiens SQLE NP_003120 R.norvegicus Sqle 29230   NP_058832 84
M.musculus Sqle 20775 Gene Info NP_033296 84
A.thaliana XF1 842213   NP_564734 45
N.crassa NCU08280 3877954   XP_961806 45
S.pombe erg1 2541106   NP_595351 44
S.cerevisiae ERG1 853086   NP_011691 40

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)