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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. TRMT2A, TRNA methyltransferase 2 homolog A (S. cerevisiae)
Sequence ID:NM_001257994
NM_022727
NM_182984
Entrez Gene ID:27037
Ensembl ID:ENSG00000099899

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaDTPSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    b-cell, bone, bone marrow, brain, cartilage, cerebellum, cerebrum, cervix, colon, embryonic tissue, endocrine, esophagus, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, peripheral nervous system, pituitary gland, placenta, pooled tissue, prostate, retina, skin, soft tissue, spleen, stem cell, stomach, synovium, t-cell, testis, thymus, thyroid, uncharacterized tissue, uterus, vascular
  • SAGE Anatomic Viewer
  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in NCI60 microarray data or SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:22q11.21Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:22: 20099824 - 20103944

 Exon Info From UCSC:
NM_022727
NM_182984

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
3347641Full LengthBC017184TRM2 tRNA methyltransferase 2 homolog A (S. cerevisiae)
3852106Full LengthBC108251TRM2 tRNA methyltransferase 2 homolog A (S. cerevisiae)
4054100Full LengthBC013352TRM2 tRNA methyltransferase 2 homolog A (S. cerevisiae)

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_073564  NP_892029  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_001190326 NP_001177255    
NM_001257994 NP_001244923    
NM_022720 NP_073557 Q8WYQ5 dsrm
WW
NM_022727 NP_073564 Q8IZ69 MTS
NM_182984 NP_892029 Q8IZ69 MTS

Related Sequences

 
mRNAGenPeptSwissProt
AF165527 AAF82263 Q8WYQ5
BC009323 AAH09323 Q8WYQ5
BC009984 AAH09984 Q8WYQ5
BC013352 AAH13352 Q8IZ69
BC017184 AAH17184 Q8IZ69
BC078147 AAH78147 Q8WYQ5
BC108251 AAI08252 Q8IZ69
AY189282 AAO86726 Q8WYQ5
AK025106 BAB15067 Q8IZ69
AK025539 BAB15165 Q8WYQ5
AK025780 BAB15238 Q8WYQ5
AK057029 BAB71349 Q8IZ69
AK222796 BAD96516 Q53GY5
AK313357 BAG36158 Q8WYQ5
AK304068 BAG64975 B4E213
BX649187 CAE46205 Q8WYQ5
CR456354 CAG30240 Q8IZ69
CR456356 CAG30242 Q8WYQ5
CU013066 CAK54497  
CU013354 CAK54796  
AM392653 CAL37531  

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens TRMT2A NP_073564 M.musculus Trmt2a 15547 Gene Info NP_001074469 85
R.norvegicus Trmt2a 287953   NP_001011895 84
A.gambiae AgaP_AGAP012408 1280304   XP_320147 44
D.melanogaster CG3808 40074   NP_649083 39
C.elegans H24K24.4 186775   NP_503353 33

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)