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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. CPT2, carnitine palmitoyltransferase 2
Sequence ID:NM_000098
RefSeqGene ID:NG_008035
Entrez Gene ID:1376
Ensembl ID:ENSG00000157184

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    b-cell, bone, bone marrow, brain, cerebellum, cerebrum, cervix, colon, embryonic tissue, endocrine, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymphoreticular, mammary gland, nervous, ovary, pancreas, pancreatic islet, peripheral nervous system, pineal gland, pituitary gland, placenta, pooled tissue, prostate, retina, skin, spleen, stem cell, stomach, synovium, t-cell, testis, thymus, thyroid, uncharacterized tissue, uterus, vascular
  • SAGE Anatomic Viewer
  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in NCI60 microarray data or SAGE data)

Associated Diseases (from OMIM)

DiseaseOther Genes
CPT DEFICIENCY,HEPATIC, TYPE II 
CPT II DEFICIENCY, LETHAL NEONATAL 
ENCEPHALOPATHY, ACUTE, INFECTION-INDUCED, 4 
MYOPATHY DUE TO CPT II DEFICIENCY 

Cytogenetic Location (from UniGene)

Cytogenetic Location:1p32Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:1: 53668003 - 53679605

NM_000098 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
16675366210053662766
6687485366639053666470
7498555366799453668100
85621605367568653676990
216130925367893553679866

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
3346025Full LengthBC002445carnitine palmitoyltransferase 2
3605012Full LengthBC005172carnitine palmitoyltransferase 2

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_000089  

Protein Infomation

RefSeq
mRNAProteinSwissProtEnzymePfam
NM_000098 NP_000089 P23786 EC 2.3.1.21 Carn_acyltransf

Related Sequences

 
mRNAGenPeptSwissProtEnzyme
M58581 AAB59462 P23786 EC 2.3.1.21
U09648 AAB60383 P23786 EC 2.3.1.21
BC002445 AAH02445 P23786 EC 2.3.1.21
BC005172 AAH05172 P23786 EC 2.3.1.21
AK223052 BAD96772 Q53G79  
AK312687 BAG35567 P23786 EC 2.3.1.21

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens CPT2 NP_000089 M.musculus Cpt2 12896 Gene Info NP_034079 87
R.norvegicus Cpt2 25413   NP_037062 84
A.gambiae AgaP_AGAP008907 1279874   XP_552786 52
D.melanogaster CG2107 38355   NP_647756 47
C.elegans cpt-2 178025   NP_001040977 46
N.crassa NCU01611 3872670   XP_956522 37
S.cerevisiae YAT1 851285   NP_009420 36

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)

BioCarta Pathways
Pathway information courtesy of BioCarta